Systematic analysis of astrocyte lineage cells after spinal cord injury unveils important regulatory long non-coding RNA Zeb2os in astrogliosisJIA QIAN WU
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TransCRISPR - sgRNA design tool for CRISPR/Cas9 experiments targeting transcription factor motifsTomasz Woźniak, Weronika Sura1, Marta Kazimierska1, Marta Kasprzyk1, Marta Podralska1, and Agnieszka Dzikiewicz-Krawczyk1
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Computational methods for circRNA quantification and functional characterizationEnrico Gaffo1, Anna Dal Molin1, Alessia Buratin1, Tretti Caterina2, Cristina Borin2, Silvia Bresolin2, and Stefania Bortoluzzi1
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Complex multiomics analysis of spinal cord injury in ratRuslan Klassen1,2, Daniel Zucha1,3, Sarka Benesova1,3, Eva Rohlova1,4, Peter Androvic1,5, Lucia Urdzikova-Machova6, Lukas Valihrach1, and Nataliya Romanyuk6
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Identification and functional characterization of lncRNAs associated with response to treatment in ovarian cancerMohammad Ahmad1,2, Bernard LAMBERT1,2,3, Nicolas VIGNERON1,2, Emilie BROTIN1,2,4, Edwige ABEILARD1,2, Martin FIGEAC5, Cecile BLANC-FOURNIER2,6, Laurent POULAIN1,2,4, Christophe DENOYELLE1,2, and Matthieu MERYET-FIGUIERE1,2
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Identification of ATM-dependent lncRNAs involved in DNA damage responseMarta Podralska1, Marcin Sajek2, Antonina Bielicka1, Magdalena Żurawek3, Iwona Ziółkowska-Suchanek3, Tomasz Kolenda4, Marta Kazimierska1, Marta Kasprzyk1, Weronika Sura1, Barbara Pietrucha5, Bożena Cukrowska5, Natalia Rozwadowska3, and Agnieszka Dzikiewicz- Krawczyk1
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A functional screen to identify microRNAs relevant for immune escape in Hodgkin lymphomaYujia Pan, Joost Kluiver, Arjan Diepstra, and Anke van den Berg
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Non-canonical miRNA-RNA base-pairing impedes tumor suppressor activity of miR-16Anais Quéméner2, Laura Bachelot2, Marc Aubry 1, Marie-Dominique Galibert2, and David Gilot1
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A high throughput screen to identify miRNAs regulating the expression of estrogen receptor and sensitivity to Tamoxifen in breast cancerZainab Al Hashami1, Bert van der Vegt1, Marian Mourits2, Debora de Jong1, Annika Seitz1, Jasper Koerts1, Joost Kluiver1, and Anke van den Berg1
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Circular ZDHHC11 is critically involved in growth of Burkitt lymphomaYichen Liu1, Xing Zhao1, Annika Seitz1, Debora Jong1, Reyhaneh Ravanbakhsh2, Agnieszka Dzikiewicz-Krawczyk3, Joost Kluiver1, and Anke van den Berg1
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IL6 signaling and long non-coding RNAs in liver cancerNadège Minoungou1, Aurélien Ginolhac1, Mélanie Kirchmeyer1, Rashi Halder2, and Iris BEHRMANN1
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A functional screen to identify microRNAs acting on the NF-KB signaling pathway in Hodgkin lymphoma
Roza Cengiz, Arjan Diepstra, Jasper Koerts, Annika Seitz, Debora de Jong, Anke van den Berg, and Joost Kluiver
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RNA Polymerase II kinetic and chromatin structure regulates defective Elp1 exon 20 splicing in an age-dependent manner
Federico Riccardi1, Giulia Romano1, Erica Bussani1, and Franco Pagani1,2
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TAPAS (TERT antisense promoter-associated) lnc RNA regulation of TERT expressionKaren Beemon
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Rescue of a familial dysautonomia mouse model by AAV9-Exon-specific U1 snRNAGiulia Romano, Federico Riccardi, Erica Bussani, and Franco Pagani
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Long non-coding RNA alteration as effect of doxorubicin drug resistance in triple negative breast cancer cell linesCristina Ciocan, Ancuta Jurj, Oana Zanoaga, Roxana Cojocneanu, Lajos Raduly, and Ioana Berindan-Neagoe
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ZDHHC11 promotes Burkitt lymphoma cell growth by stimulation of the MEF2B-BCL6 axisLotteke Ziel-Swier1, Yichen Liu1, Marta Kazimierska2, Annika Seitz1, Debora de Jong1, Jasper Koerts1, Agnieszka Dzikiewicz-Krawczyk2, Anke van den Berg1, and Joost Kluiver1
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Dlx4os: a lncRNA regulating the phenotype switch in melanoma?Ana Luisa Ayub1, Miriam Jasiulionis1, Eduardo Reis2, Diogo Pessoa2, Frank Slack3, Ionnis Vlachos3, and Leinal Sejour3
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Dysregulate miRNAs in Sabutoclax treated triple negative breast cancer cell linesLaura Pop1, Ancuta Jurj1, Lajos Raduly1, Chiara Mattioli3, Lenart Demsar2, Ecaterina Isacescu1, Natalia Shnyanina4, and Ioana Berindan-Neagoe1
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Dysregulated profile of microRNAs as possible biomarkers for non-small cell lung cancer, both in plasma and plasma exosomesLajos Raduly1, Antonia Harangus2, Oana Zanoaga1, Ancuta Jurj1, Marioara Simon 2, Cornelia Braicu1, and Ioana Neagoe1
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Non-canonical RNA caps affect the RNA turnover under stress conditions in E. coli Valentina Serianni and Hana Cahová
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Corticosterone-mediated regulation and functions of miR-218-5p in rat brainYogesh Dwivedi
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The nuclear microRNA miR-29b binds to MDM2 pre-mRNA to facilitate its exon inclusion and regulation of the p53 tumor suppressor pathwayDawn Chandler and Matias Montes
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m7Gp4Gm-RNA: Development of Selective CaptureSeq MethodOndřej Nešuta1, Lenka Gahurová1, and Hana Cahová1
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The structural diversity of mature miRNAs and its functional importanceMarta Fik-Jaskółka2, Dorota Gudanis1, and Agnieszka Belter1
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Downregulation of miR-29b reduce triple breast cancer cells proliferationOana Zanoaga1, Lajos Raduly1, Vlad Morhan1, Zsofi Papi2, Ancuta Jurj1, Cristina Ciocan1, Ioana Berindan-Neagoe1, and Cornelia Braicu1
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Roundabout of TP53-MALAT1-TAZ and their regulatory miRNAs: miR-15a-5p, miR-25-3p miR-34a-5p, and miR-141-3p in prostate cancer: Too hot to be beaten?Liviuta Budisan1, Vlad Schitcu1,2,3, Lajos Raduly1, Oana Zanoaga1, Vlad Munteanu2,3, Ancuta Jurj1, Ioan Coman3,4, Bogdan Petrut2,3, Cornelia Braicu1, and Ioana Berindan-Neagoe1
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The biological significance of dysregulated microRNAs in prostate cancer: a common signature in tumor tissue and liquid biopsy Andreea-Mihaela Nutu1, Vlad Horia Schitcu1,2,3, Lajos Raduly1, Oana Zanoaga1, Cristina Ciocan1, Vlad Cristian Munteanu2,3, Roxana Cojocneanu1, Bogdan Petrut2,3, Ioan Coman2, Cornelia Braicu1, and Ioana Berindan-Neagoe1
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Mitochondrial transport of catalytic RNAs and targeting of the organellar transcriptome in plant and human cellsPawel Glodowicz1, Romain Val2, Joanna Rorbach, Robert Lightowlers3, André Dietrich2, and Katarzyna Rolle1
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Altering the primary structure of miR-21, miR-155 and miR-181a,b,c can increase mRNA target specificity in lung cancer cellsSergiu Chira, Liviuta Budisan, Oana Zanoaga, Lajos Raduly, Andreea Nutu, and Ioana Berindan-Neagoe
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MODULATING 5’ UNTRANSLATED REGION SPLICING TO ENHANCE CD20 EXPRESSION AND RITUXIMAB SENSITIVITYZhiwei Ang1, Carolin Schmidt1, Katharina Hayer1, Joseph Loftus2, Sarah Tasian2, and Andrei Thomas-Tikhonenko1
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Comprehensive analysis of cirRNA expression pattern and interaction network in glioblastomaJulia Latowska-Łysiak1, Żaneta Zarębska1, Marcin Sajek2,3, Konrad Kuczyński1, Julia Misiorek1, Marek Żywicki4, Agnieszka Rybak-Wolf5, Rafał Piestrzeniewicz7, Anna Barciszewska6, and Katarzyna Rolle1
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MEG3 may affect podocalyxin expression and extracellular matrix accumulation in diabetic kidney disease by modulating gene expression of key epithelial componentsRyan Castaneira, Daniel Morris, and Nikolaos Tsotakos
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Glyceraldehyde-3-phosphate dehydrogenase, a non-canonical RNA-binding protein as a potential therapeutic target in acute myeloid leukemiaSama Shamloo1, Eric Wang2, Alejandro Ulloa-Morales1, Yohana Ghebrechristos2, Ioannis Aifantis2, and Jochen Imig1
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The XRN1-regulated RNA helicase activity of YTHDC2 ensures mouse fertility independently of m6A recognitionLingyun Li and Kyrylo Krasnykov
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qRT-PCR Analysis of the Interaction of the three RNA Types on a Set of 70 Clinical Samples of Ovarian CarcinomaIrina Pronina, Aleksey Burdennyy, and Vitaliy Loginov
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Distinct circular RNA and long non-coding RNA expression profiles in pediatric posterior fossa ependymomasUlvi Ahmadov1, Karoline Ebbesen3,4, Charlotte Udengaard1, Astrid Marie Sehested5, Jørgen Kjems3,4, Helle Broholm5, and Lasse Kristensen1
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Interactome of HIV proteins and their host RNA interaction partnersTinus Schynkel1, Willem van Snippenberg1,2, Kimberly Verniers2, Eric de Bony2, Gwendolyn Jang3, Nevan Krogan3, Pieter Mestdagh2, Linos Vandekerckhove1, and Wim Trypsteen1,2
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Targeting the biogenesis of miR-124, a potent natural anti-inflammatory miRNA, by drug candidate ABX464: a novel mechanism of action for treatment of patients with chronic inflammatory diseases
Jamal Tazi
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Obesity and cancer: a microRNA storyAri Meerson1,2, Hila Yehuda1,2, Yaniv Eliraz1,2, and Rahaf Salalha1,2
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The mammalian cap-specific m6Am RNA methyltransferase PCIF1 regulates transcript levels in mouse tissuesRadha Pandey1, Elena Delfino1, David Homolka1, Adriana Roithova1, Kuan-Ming Chen1, Lingyun Li1, Giulia Franco4, Cathrine Broberg Vagbø3, Emmanuel Taillebourg4, Marie-Odile Fauvarque4, and Ramesh Pillai1
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Analysis of Circulating MicroRNA Expression in Athletes Comparing to Non-athletes Using a Hypoxia Signaling Pathway PanelIrina Pronina1 and Pavel Postnikov2
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Spatial profiling of circular RNAs in cancer reveals high expression in muscle and stromal cells: implications for bulk tissue analysesLasse Kristensen1, Juan Luis Rodriguez1, Ulrik Korsgaard2, Ulvi Ahmadov1, Stine Vissing1, Morten Olesen1, Jørgen Kjems3, and Henrik Hager2
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Molecular role of the METTL17 RNA methyltransferase in mitochondrial ribosome biogenesisNancy Allahib
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4-miRNAs panel in early-stage lung cancer diagnosis and prognosisPaul Chiroi1, Radu Pirlog1, Ioana Rusu2, Ancuta Jurj1, Liviuta Budisan1, Cecilia Bica1, Cornelia Braicu1, Doinita Crisan, and Ioana Berindan-Neagoe1
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Role of microRNAs in opioid addictionMaria Mavrikaki1, Christos Miliotis1, Dimitra Karagkouni1, Tanvi Saxena1, Sabrina Zhu1, Ioannis Vlachos1, Elena Chartoff2, and Frank Slack1
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Recent advances in small molecule inhibitors of miR-21Qi Liang
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Linc01268 restrains expression of the transcription factor GATA2 in immune activated human macrophagesNils Schmerer, Harshavardhan Janga, Marina Aznaourova, and Leon Schulte
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The role of microRNAs in the biology of human neural stem cellsVeronika Fedorová1, Kateřina Amruz Černá1, Veronika Pospíšilová1, Jan Oppelt5, Jan Raška1, Tomáš Bárta1, Marek Mráz2,3, and Dáša Bohačiaková1,4
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Global circRNA expression changes predate clinical and histological improvements of psoriasis patients upon secukinumab treatmentSabine Seeler1, Liviu Moldovan1, Lars Iversen2, Henrik Hager3, Jørgen Kjems4,5, Claus Johansen2, and Lasse Kristensen1
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Nuclear lncRNA complexes rewire systemic immune gene expression during severe COVID-19Nils Schmerer1 and Leon Schulte1,2
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DIANA-miRPath v4.0 extends exploration of combined miRNA effects in cell, tissue and phenotypic contextsSpyros Tastsoglou1,2, Giorgos Skoufos1,2,3, Marios Miliotis1,2, Dimitra Karagkouni1,2,4, Ioannis Koutsoukos1, Anna Karavangeli1,2, Filippos Kardaras1,2, and Artemis Hatzigeorgiou1,2
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Characterization of the ZFP36L2 RNA-binding protein in acute myeloid leukemia and normal hematopoiesisAnna Lee, Eric Wang, and Iannis Aifantis
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Whole transcriptome analysis identifies coding and non-coding RNA markers of liver injury in whole body irradiated miceMoly Aryankalayil, Michelle Bylicky, Sunita Chopra, and C.Norman Coleman
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From morphology to molecular pathology in early-stage lung cancer tumor microenvironment Radu Pirlog1, Ioana Rusu2, Paul Chiroi1, Ancuta Jurj1, Liviuta Budisan1, Cecilia Bica1, Cornelia Braicu1, Doinita Crisan3, and Ioana Berindan-Neagoe1
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Expression of lncRNAs and pluripotency genes after human chorionic gonadotropin treatment corresponds with increased proliferation and differentiation potential in-vitro and with improved hematopoiesis in-vivo. Are we far enough for therapy?Andrei Cismaru1, Ciprian Tomuleasa2, Olga Soritau3, Cornelia Braicu1, Ancuta Jurj1, Lajos-Zsolt Raduly1, Liviuta Budisan1, Sergiu Chira1, Roxana Cojocneanu1, Raluca Muntean2, Diana Gulei2, Madalina Gherman5, Gabriel Cismaru4, and Ioana Berindan-Neagoe1
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plasmiR database caters circulating microRNA biomarkers with experimental supportMarios Miliotis1,2, Spyros Tastsoglou1,2, Ioannis Kavakiotis1, Athanasios Alexiou1,2, Elena Gkotsi3, Anastasia Lambropoulou2, Vasileios Lygnos2, Vasiliki Kotsira1, Vasileios Maroulis3, Dimitrios Zisis2, Giorgos Skoufos1,4, and Artemis Hatzigeorgiou1,2
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A functional map of LncRNAs involved in Adaptation pathways of Breast Cancer CellsBianca Giuliani1, Chiara Tordonato2, Carmela Rubolino1, Patricio Fuentes1, Virginia Brancato1, Matteo Marzi1, and Francesco Nicassio1
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The potential of modulating the activity of exoribonucleasesRute Matos1, Kenneth McDowall2, and Cecília Arraiano1
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The effect of obatoclax mesylate on lung adenocarcinoma cellsAncuta Jurj, Cornelia Braicu, Oana Zanoaga, Lajos Raduly, and Ioana Berindan-Neagoe
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Intronic microRNA processing is facilitated by the P-rich domain of DROSHASoomin Son1,2, Baekgyu Kim1,2,3, Jihye Yang1,2, and Narry Kim1,2
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Unravelling the function of a short non-coding sequence in gene expression Alexandra Moreira1,2,4, Ana Moutinho1,4, Ana Eufrásio1,2,4, Joana Azevedo1, Joana Teixeira1,2,4, Joana Machado1,3,4, Alexandre Ferreira1,3,4, Isabel Pereira-Castro1,4, and José Bessa1,4
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microT-CNN: an avant-garde Deep Convolutional Neural Network unravels functional miRΝΑ targets beyond canonical sitesDimitra Karagkouni1,2,3, Elissavet Zacharopoulou1,2, Anna Karavangeli1,2, Athanasios Alexiou1,2, and Artemis Hatzigeorgiou1,2
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Dissecting the residues responsible for the substrate specificity of Dis3L2 enzymeSusana Costa, Cecília Arraiano, Rute Matos, and Sandra Viegas
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Composite targeting of nuclear receptors and microRNA-21 ameliorates non-alcoholic fatty liver disease progression towards carcinogenesis in miceTawhidul Islam1, Pedro Rodrigues2, Diogo Fernandes1, Mariana Henrique1, Helena Ignačáková1, Pedro Picado1, Manuela Gaspar1, Marta Afonso1, André Simão1, Cecilia Rodrigues1, and Rui Castro1
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Neuronal microRNAs safeguard ER Ca2+ homeostasis and attenuate the unfolded protein response upon stressMaria Paschou3, Panagiota Papazafiri, Chrysanthi Charalampous3, Michael Zachariadis, Skarlatos Dedos, and Epaminondas Doxakis3
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Comprehensive and integrative genomic characterization of malignant melanoma patientsIoana Berindan-Neagoe 1, Simona Gurzu 3, Cornelia Braicu1, Cristina Ciocan1, Laura Pop1, Cecilia Bica 1, Rares Buiga2, Radu Pirlog 1, and Lajos Raduly1
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microRNAs in nasopharynx and serum linked to COVID-19 severity and mortalityMarios Miliotis1,2, Spyros Tastsoglou1,2, Filippos Kardaras1,2, Dimitra Karagkouni1,2,3,4, Anna Karavageli1,2, Gia Vatsellas5, Georgia Papadamou6, Dimitris Thanos5, Efthimia Petinaki7, and Artemis Hatzigeorgiou1,2
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A nanoformulated 11-microRNA pool boosting overall survival in the treatment of glioblastoma via synergistic modulation of the tumor microenvironmentSilvia Rancati1, Rui Pereira1, Paolo Decuzzi2, and Davide De Pietri Tonelli1
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Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampusCaterina Gasperini, Kiril Tuntevski, and Davide De Pietri Tonelli
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A putative deoxyribonuclease activity of human ribonuclease DicerMarta Wojnicka, Agnieszka Szczepańska, and Anna Kurzyńska-Kokorniak
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RNA and DNA G-quadruplexes bind to human dicer and inhibit its cleavage activityAgnieszka Szczepanska1, Natalia Koralewska2, Kinga Ciechanowska1, Marta Wojnicka1, Maria Pokornowska1, Marek Milewski2, Dorota Gudanis3, Daniel Baranowski3, Chandran Nithin4, Janusz Bujnicki4,5, Zofia Gdaniec3, Marek Figlerowicz2, and Anna Kurzynska-Kokorniak1
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Characterization of the biochemical activities of the human Dicer helicase domainKinga Ciechanowska and Anna Kurzyńska-Kokorniak
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Rewiring of RNA-chromatin interactions during adipocyte differentiationAlessandro Bonetti1 and Federico Agostini2
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MicroRNA loss drives tumor development in murine models of angiosarcomaAnnaleigh Powell-Benton1, Anthony Murphy1, Emma Terwilliger1, Nadia Lanman2, and Jason Hanna1
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Revealing evidence of DNA:DNA:RNA triplex and DNA:RNA heteroduplex formation of lncRNAs by NMR spectroscopyJasleen Kaur Bains1,2, Nina M. Krause1,2, Christian Richter1,2, Hendrik R.A. Jonker1,2, Matthias S. Leisegang3, Ralf P. Brandes3, and Harald Schwalbe1,2
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Inter-organellar nucleic acid communication by a mitochondrial tRNA regulates nuclear transcriptionChristopher Rouya, King Yambire, and Sohail Tavazoie
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NON-CANONICAL EXON USAGE IN PEDIATRIC LEUKEMIA: IMPLICATIONS FOR CHEMORESISTANCEManuel Torres-Diz1, Clara Reglero-Gomez6, Catherine Falkenstein2, Zhiwei Ang1, Priyanka Sehgal1, Caleb Radens5, Yoseph Barash5, Sarah Tasian22,4, Adolfo Ferrando6, and Andrei Thomas-Tikhonenko1,2,3,4
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TP53 mutation-associated and copy-dependent KDM7A-DT expression affects DNA repair and promotes invasive breast cancer progressionVasileios Gouzouasis1, Antonis Giannakakis1,2,3, Margaritis Tsifintaris1, Charisios Triantafyllou1, Ghim Ow2, Csaba Papp4, Anna Ivshina2, and Vladimir Kuznetsov2,4
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