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GENERAL INFORMATION Accommodations The conference participants
will be staying at the Minoa Palace Hotel (A' class), which is located in Platanias, 24 km
from Chania International Airport and 12 km west of Chania
town center. Participants are kindly asked to
take a taxi from the
airport to the hotel . Conference
Venue The Oral
Presentations An LCD projector
will be available for the oral presentations. Speakers are asked to bring their USB flash drive or CD to the
conference reception desk at least 30
minutes prior to the session. The
allocated time for all presentations, unless otherwise indicated, includes
five minutes Q&A. Posters Posters
should be mounted Monday, June 16,
from 5:00 pm – 8:00 pm on the
designated boards and dismounted at the end of the meeting. The
dimensions of the boards are 90 cm
wide x 140 cm high. Adhesive tape for
mounting the posters on the boards will be available at the poster area. Internet Internet will be available for participants during
the meeting hours free of charge. All Aegean Conferences events are
non-smoking. |
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Session
II |
Chair: V Cheung |
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11:45 AM |
6 |
Genetics
of human gene expression R
Nayak, D Smirnov, M Morley, T Weber, RS Spielman, and VG Cheung |
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12:15 PM |
7 |
Computational analysis
of biological networks M Koyuturk, J Pandey,
S Subramaniam, and A Grama |
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12:45 PM |
8 |
Systems biology
of the cell cycle L Alberghina |
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1:15 PM |
9 |
Correlation of
chromatin modification and genetic regulation S Jones, G Robertson, M Bilenky, A Tam, Y Zhao, T Zeng,
N Thiessen, T Cezard, A Fejes, E Wederell, R Cullum, M Krzywinski, I Birol, M Hirst, P
Hoodless, and M Marra |
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1:45 PM |
10 |
Spatial
and temporal control of MAPK signaling during periodic morphogenesis Z Hilioti, W Sabbagh, Jr, |
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2:00 PM |
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Lunch |
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8:00 PM |
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Dinner at a local Greek Tavern |
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The bus for the tavern will depart from
the hotel at 7:30 PM |
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Wednesday,
June 18
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Session
III |
Metabolic Disease Networks Chair: A Attie |
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8:30 AM |
11 |
A gene
expression network model of type 2 diabetes establishes a relationship
between cell cycle regulation in islets and diabetes susceptibility MP Keller, YJ Choi, P Wang, DB Davis, ME Rabaglia, AT Oler, DS Stapleton, C Argmann, KL Schueler, S Edwards, HA Steinberg, EC Neto, R Klienhanz, S Turner, MK Hellerstein, EE Schadt, BS Yandell, C Kendziorski, and AD Attie |
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9:00 AM |
12 |
Metabolomic: a global biochemical approach to the
study of human disease and drug effects R Kaddurah-Daouk |
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9:30 AM |
13 |
Integrating gene expression, sequence
and proteomics data to identify disease biomarkers |
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10:00 AM |
14 |
Insulin signaling, adipose tissue and metabolic
syndrome CR
Kahn |
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10:30 AM |
15 |
The genetic architecture of diet-induced
obesity DA Buchner, LC Burrage, AE Hill, EJ Vazquez, M Rosca, P Solinas, S Yazbek, H Shao, ES Lander, CL Hoppel, and JH Nadeau |
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10:45 AM |
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Coffee Break & Poster
Viewing |
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Session
IV |
Chair: H Lewin |
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11:30 AM |
16 |
Lipid
maps approach to lipidomics EA Dennis |
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12:15 PM |
17 |
Multi-tissue
profiling of human insulin resistance and pharmacological insulin
sensitization G
Hsiao, A Hsiao, J Chapman, PD Miles, JG Yu, CH Courtney, J Neels, JL Resnik, J Wilkes, D Thapar, JM Ofrecio, S
Subramaniam, and DD Sears |
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12:45 PM |
18 |
A modularized
model of apoptosis HA
Harrington, |
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1:15 PM |
19 |
Network analysis identifies
affected biological processes in type 2 diabetes models M
Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, and |
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1:45 PM |
20 |
DGAT1:
a diet-regulated quantitative trait
locus that affects hepatic lipid deposition R Oliveira, JJ Loor, NA Janovick Guretzky, JK Drackley, and HA Lewin |
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2:00 PM |
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Lunch |
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8:00 PM |
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Dinner at Local Greek Tavern |
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The bus for
the tavern will depart from the hotel at 7:30
PM |
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Thursday, June 19 |
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Session
V |
Organs, Pathways and Stem cells Chairs: |
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8:30 AM |
21 |
The systems biology cycle for pathways and
networks: modeling and experimentation MR Maurya, S Bornheimer, M Farquhar, and S Subramaniam |
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9:00 AM |
22 |
Transcription
factor -mediated global epigenetic remodeling to induced pluripotent
stem cells K Plath, R Sridharan,
J Tchieu, MJ Mason, Q Zhou, W Lowry, |
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9:30 AM |
23 |
Localization
of transcription factors in embryonic stem cells X Chen, H Xu, P Yuan, F Fang, M Huss, V Vega, E Wong, Y Orlov, W Zhang, J Jiang, YH Loh, HC Yeo, ZX Yeo, V Narang, K Govindarajan, B Leong, A Shahab, Y Ruan, G Bourque, WK Sung, N Clarke, CL Wei, and HH Ng |
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10:00 AM |
24 |
NHLBI
programs and resources in genomics, proteomics & other emerging areas P Qasba |
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10:30 AM |
25 |
A
complex systems approach to modeling stem cell decision-making JD Halley, DA Winkler, and FR Burden |
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10:45 AM |
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Coffee Break |
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Session VI |
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Chair: P Hunter |
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11:15 AM |
26 |
A framework for computational physiology PJ Hunter |
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11:45 AM |
27 |
Systems
biology of kidney development |
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12:15 PM |
28 |
Learning global
transcriptional dynamics with the inferelator
and cMonkey A
Madar, P Waltman, T Kacmarczyk, V Thorsson, |
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1:45 PM |
29 |
Transcriptional networks in
development and disease KP White |
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1:15 PM |
30 |
Disease-associated
transcription factor modules M Wiesinger, P Perco, J Söllner, A Lukas, and B Mayer |
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1:30 PM |
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Lunch |
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3:00 PM |
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City Tour |
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The bus for the city tour will depart from the hotel at 3:00 PM |
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Dinner at a local Greek
Tavern |
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Friday, June 20 |
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Session
VII |
Inflammation, immunity, microbes and the
environment Chair: J Lambris |
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8:30 AM |
31 |
Evasion
strategies of microorganisms J
Lambris |
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9:00 AM |
32 |
Core diversity profile of human skin microbiome in health and disease EA Grice, TC Scharschmidt, HH Kong, AC Young, NISC Comparative Sequencing Program, S Conlan, RW Blakesley, GG Bouffard, ML Turner, ED Green, and JA Segre |
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9:30 AM |
33 |
Microbial
community proteogenomics J Banfield, V Denef, N VerBerkmoes, P Wilmes, G Dick, C Belnap, D Goltsman, R A Andersson, S Simmons, C Pan, B Baker, C Sun, M Wilkins, S Singer, G Tyson, M Shah, M Thelen, and R Hettich |
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10:00 AM |
34 |
A predictive
model fortranscriptional control of physiology in a
free living cell NS Baliga |
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10:30 AM |
35 |
Modeling
interactions of heterogeneous genetic perturbations GW Carter and T Galitski |
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10:45 AM |
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Coffee Break & Poster
Viewing |
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Session
VIII |
Inflammation,
immunity, microbes and the environment Chair: M Kellis |
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11:45 AM |
36 |
Interrogating dynamic phenotypes using a high-throughput
single cell microfluidic platform RJ Taylor, D Falconnet, A Niemisto, S Ramsey, I Shmulevich, T Galitski, and C Hansen |
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12:15 PM |
37 |
Integrative
analysis for tnfa-nfkb signaling pathway LWK Cheung and M Visvanathan |
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12:45 PM |
38 |
Hepatitis C virus infection
protein network L Tafforeau, B de Chassey, V Navratil, M S Hiet, A Aublin, S Agaugué, G Meiffren, F Pradezynski, BF Faria, T Chantier, M Le Breton, J Pellet, N Davoust-Nataf,
P E Mangeot, A Chaboud, F
Penin, Y Jacob, PO Vidalain,
M Vidal, P André, C Rabourdin-Combe, and V Lotteau |
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1:00 PM |
39 |
Pathological
iron loading among patients with thalassemia:
solving the clinical mystery with systems medicine JL Miller |
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1:15 PM |
40 |
VelociGene®: an integrated suite of high
throughput, customizable genome engineering technologies for analysis of gene
function and drug target discovery and development AN Economides |
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1:30 PM |
41 |
Regulatory genomics of drosophila and
mammalian species M Kellis |
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2:00 PM |
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Concluding Remarks |
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2:15 PM |
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Lunch |
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8:00 PM |
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Gala Dinner |
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Saturday,
June 21
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7:30 AM |
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Breakfast |
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Departure |
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POSTERS |
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42 |
Pathway
enrichment analysis reveals that IL-17 pathway modulation is more closely related
to psoriasis disease resolution with effective therapy than IFNg M Suárez-Farińas, L Zaba, J Fuentes-Duculan, I Cardinale, P Gilleaudeau, M Sullivan-Whalen, and J Krueguer |
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43 |
Computational
synthetic biology YN Kaznessis |
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44 |
A
dependency graph approach for analyzing differential gene expression data of
B-cell lymphomas I Mühlberger, P Perco, A
Bernthaler, R Fechete, A Lukas, and B Mayer |
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45 |
Neostasis as a therapeutically vulnerable homogeneous component of
robust cancer systems H Warenius and L Kyritsi |
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46 |
Predicting
targets and risk genes for long-QT syndrome side effects SI Berger, A Ma’ayan, and R Iyengar |
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47 |
CASIMIR,
A coordination action focusing on database interoperability and financial
sustainability; a step formward V Aidinis, C Chandras, M Zouberakis, and the CASIMIR consortium |
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48 |
Integrated
dynamics of the regulatory network controlling cell division in Caulobacter P Brazhnik, S
Li, and JJ Tyson |
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49 |
A comprehensive
map of molecular interactions in RB/E2F pathway L
Calzone, A Gelay, A Zinovyev,
F Radvanyi, and |
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50 |
Gene
expression responses to endoplasmic reticulum (ER) stress in humans BA Dombroski, WM Ankener, K Chapman, KG Ewens, and RS Spielman |
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51 |
Detection
of mRNA transcripts for the ESCRT machinery in Entamoeba
histolytica I López-Reyes, C Bańuelos-Barrón, and E
Orozco |
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52 |
Cell
networks in the pituitary structure, function, development M Cassou, N Courtois, N Chauvet, C Lafont, F Molino, P Mollard, J Drouin, I Robinson, and R Smallwood |
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53 |
Feedback
regulation in gene expression and gradient sensing in the yeast pheromone
mark pathway |
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54 |
Deconvolution of functional association network modules involced in mircrobial iron
homeostasis R Quatrini, F Lazo,
C |
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55 |
Systems analysis
of endosomal transport using phenotypic screening
and genetic interactions in yeast NR Quenneville,
M Davey, R White, K Bryan, and |
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56 |
Relational
genomic data analysis as an approach to study oldactory
endophenotypes of schizophrenia L Rioux, M Levy, SJ Kanes,, RW Williams, and J Nissanov |
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57 |
Putative metabolic regulators in nutrient signalling
and adaptation: a comparative case study through gene-metabolite correlation
networks for plants and humans as two
evolutionary distant biological systems NN Rudovich and VJ Nikiforova |
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58 |
Mutagenic analysis of Type I
restriction-modification system EcoR124I E Šišáková, A Guzanová,
and M Weiserová |
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59 |
Potential role of EF-TU in regulation and cell
signalling during morphological and biochemical differentiation in streptomycetes J Weiser, M Holub,
Š Nezbedová, LD Nguyen, and |
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60 |
Analysis
of the proteomic profile modulated by the antitumoral
peptide CIGB-300 AR Ulloa,
Y Perera, J Gil, Y Ramos, LC Serra, L Betancourt, A
Sánchez, LJ González, V Besada, BE Acevedo, D Alonso, DE Gomez, and SE Perea |
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61 |
Pathways
analysis of the proteins encoded by the genes protecting against Huntington’s
disease mutation identified in a drugable
genome-wide RNA intereference screen E
Gonzalez Couto, A Caricasole, F Heitz,
GC Terstappen, and A Kremer |
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62 |
Cue-signal
analysis of U937 cells: a model for inflammation CW
Espelin, A Goldsipe, JS Rodriguez, P Sorger, D Lauffenburger, D de Graaf, and B Hendriks |
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